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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39639826_39640972_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39639826 - 39640972
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
ATATATGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCAGCT
Flanking Amino Acid:
ALAYAYFLDKVSPPDVLCLP
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73
0.52
1
65.4
44.5
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
55.4
0.25
1.9
81.41
40.1

Associated Gene:

Gene:
PRUNE2
Ensembl Gene ID:
ENSAPLG00000020377
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022085
39582841 - 39671721
88881