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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39641078_39671512_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39641078 - 39671512
Intron Length:
30435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TGTTGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTGTTACTC
Flanking Amino Acid:
EFLQRARCQLNRSKHLEKVH
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.9
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
79.1
0.65
1
72.2
42.7
Minor 5ss
34.4
-1.8
2.9
39.9
40.3
Minor BPS
46.2
-0.3
2.2
57.77
42

Associated Gene:

Gene:
PRUNE2
Ensembl Gene ID:
ENSAPLG00000020377
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022085
39582841 - 39671721
88881