Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39749656_39756717_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39749656 - 39756717

Intron Length:

7062

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGCGGGCC

5'SS Class:

major

3'SS Sequence:

TCTTTGCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

GCTTTTTGAAAT

Flanking Amino Acid:

SSQLKLGIWGGAVALKNLEI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

63.7

36.4

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

0.74

0.8

81.2

30.9

Minor 5ss

-3

3.4

32.8

42.4

Minor BPS

55.6

0.25

1.5

70.27

40.6

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032013

39749556 - 39827633

78078

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430