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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39756762_39758300_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39756762 - 39758300
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTAACTGTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTATGTAACT
Flanking Amino Acid:
KNLEIKENALLSCFFVFLGQ
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.6
0.33
1
57.9
42.8
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
51.7
0.13
2.2
74.95
42

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005236
39749556 - 39870985
121430
ENSAPLT00000032013
39749556 - 39827633
78078
ENSAPLT00000018189
39749556 - 39870985
121430