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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39759705_39760000_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39759705 - 39760000

Intron Length:

296

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTCGCTTTATTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATGAT

U12 Branch Point Sequence:

TTCGCTTTATTA

Flanking Amino Acid:

SNIHVRYEDDITNRNNPLSF

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

89.1

24.2

Major BPS

63.3

0.33

1.1

53.7

41.6

Major PPT

73.9

0.54

0.9

74.1

35.3

Minor 5ss

39.8

-1.1

2.9

41.5

Minor BPS

56.2

0.19

1.7

66.17

41.5

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032013

39749556 - 39827633

78078