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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39760061_39761482_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39760061 - 39761482
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GACGTATTAATA
Flanking Amino Acid:
GISLQNLSLQLVRLDNLFAY
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
48.3
-0.1
1.7
53.69
39

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032013
39749556 - 39827633
78078