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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39761564_39761963_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39761564 - 39761963
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTCTTAAACT
Flanking Amino Acid:
FYHGGYDESLVNLKQGVASH
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
65.6
0.35
1
62.8
42.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
73.5
0.82
1.6
88.47
36.7

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005236
39749556 - 39870985
121430
ENSAPLT00000032013
39749556 - 39827633
78078
ENSAPLT00000018189
39749556 - 39870985
121430