About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39765935_39769298_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39765935 - 39769298
Intron Length:
3364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGATAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TGTTTGATAATT
Flanking Amino Acid:
TLARQQAEVEATKAGLKIYR
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
75.2
0.57
1
71.3
43
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
50.3
0.09
2.3
77.07
39.7

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430
ENSAPLT00000032013
39749556 - 39827633
78078