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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39783292_39784920_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39783292 - 39784920
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTGTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTTGTGACT
Flanking Amino Acid:
LLLLDLGSLKMKSKSRSDLS
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
65.7
0.35
1.1
67.7
42.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
61.8
0.45
2
85.97
34.5

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032013
39749556 - 39827633
78078
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430