Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39794996_39797025_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39794996 - 39797025

Intron Length:

2030

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATACAA

5'SS Class:

major

3'SS Sequence:

AATTAATCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TTGTTGTGAATT

Flanking Amino Acid:

VLDLHSFAESESEEEFYDAL

Intron Amino Acid Position:

820

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

69.7

36.3

Major BPS

0.82

0.8

24.9

Major PPT

68.7

0.42

0.9

64.4

41.6

Minor 5ss

31.3

-2.1

39.2

Minor BPS

52.4

0.15

2.1

75.93

41.4

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032013

39749556 - 39827633

78078

ENSAPLT00000005236

39749556 - 39870985

121430