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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39797199_39799762_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39797199 - 39799762

Intron Length:

2564

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGTTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATAAT

U12 Branch Point Sequence:

AATTCCCTACCC

Flanking Amino Acid:

EFQLRFEVAEVLIKLCRLTG

Intron Amino Acid Position:

878

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

78.1

32.2

Major BPS

63.8

0.34

1.2

64.1

39.8

Major PPT

87.2

0.84

0.6

84.5

23.5

Minor 5ss

39.7

-1.2

3.4

55.3

48.9

Minor BPS

56.9

0.2

71.08

39.7

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032013

39749556 - 39827633

78078

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430