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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39800851_39804874_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39800851 - 39804874
Intron Length:
4024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
EEKKDVLKKLTSKKSKYEDV
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.9
0.67
0.9
73.4
37
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032013
39749556 - 39827633
78078
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430