Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39808558_39809903_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39808558 - 39809903

Intron Length:

1346

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGTAT

5'SS Class:

major

3'SS Sequence:

TAATTTCTGAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTATTTAATG

Flanking Amino Acid:

DIQSTSQQSAGVTVVTSAVV

Intron Amino Acid Position:

1361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

1.1

75.6

36.7

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

61.6

0.26

1.2

63.9

41.5

Minor 5ss

43.9

-0.7

3.3

64.1

47.4

Minor BPS

71.8

0.55

1.5

76.08

35.8

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005236

39749556 - 39870985

121430