Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39810029_39810931_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39810029 - 39810931

Intron Length:

903

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTATA

5'SS Class:

strong_major

3'SS Sequence:

TCCATTTAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTCCATTTAAAC

Flanking Amino Acid:

LVLYSPNSKQVTNLDQRDDL

Intron Amino Acid Position:

1403

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

87.1

Major BPS

100

1.24

0.5

100

Major PPT

69.2

0.43

65.5

38.9

Minor 5ss

37.9

-1.4

3.1

50.4

46.1

Minor BPS

55.8

0.16

1.6

66.09

39.1

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005236

39749556 - 39870985

121430

ENSAPLT00000032013

39749556 - 39827633

78078