About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39811905_39812522_F

Intron Information:

Intron Rank:
34
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
39811905 - 39812522
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGCTGCTG
5'SS Class:
weak_major
3'SS Sequence:
TATGTTTTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATCAAAT
Flanking Amino Acid:
ADIFLKANAETPVQPVSTME
Intron Amino Acid Position:
1498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.09
1.1
47.1
42.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.6
0.55
1.1
75.5
38.2
Minor 5ss
29.6
-2.3
3.5
38
41.3
Minor BPS
46.8
-0.1
2
68.43
41

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018189
39749556 - 39870985
121430