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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39812756_39815250_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39812756 - 39815250
Intron Length:
2495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATG
Flanking Amino Acid:
PEKRKGNVTTVLQPCDFFFE
Intron Amino Acid Position:
1594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.9
0.65
0.8
76.2
32.4
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
69.8
0.48
1.5
75.15
37.2

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032013
39749556 - 39827633
78078
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430