Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39815344_39815866_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39815344 - 39815866

Intron Length:

523

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAGGTCGA

5'SS Class:

major

3'SS Sequence:

TTCTTTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATTATTCCAACT

Flanking Amino Acid:

DLMIKSLTVKVSPIIINTVI

Intron Amino Acid Position:

1625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

1.1

62.6

43.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

90.8

0.92

0.6

88.2

21.6

Minor 5ss

33.9

-1.8

3.2

40.5

Minor BPS

48.6

-0

1.9

71.89

38.8

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032013

39749556 - 39827633

78078

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430