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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39816224_39816977_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39816224 - 39816977
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AATTTCCTAACT
Flanking Amino Acid:
INLHSQLELEVHYFNEMFGV
Intron Amino Acid Position:
1744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
70.2
0.46
0.8
65
30.5
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
69
0.68
1.6
84.38
35.5

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032013
39749556 - 39827633
78078
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430