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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39822431_39824624_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39822431 - 39824624

Intron Length:

2194

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATTAT

5'SS Class:

major

3'SS Sequence:

ATTTCATTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTATTTTAAAT

Flanking Amino Acid:

NEFNIPLSAYRSVLSLQPIA

Intron Amino Acid Position:

1987

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

77.5

33.4

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.76

0.8

77.4

35.3

Minor 5ss

40.1

-1.1

3.2

57.9

46.7

Minor BPS

70.8

0.73

1.3

85.51

34.3

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000032013

39749556 - 39827633

78078