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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39824923_39826057_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39824923 - 39826057

Intron Length:

1135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTAATAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

LPYHITYSVEGNGNKYNTLE

Intron Amino Acid Position:

2100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

83.7

34.8

Major BPS

87.3

0.93

0.8

36.5

Major PPT

73.1

0.52

1.1

81.1

34.5

Minor 5ss

40.2

-1.1

3.1

59.2

45.2

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005236

39749556 - 39870985

121430

ENSAPLT00000032013

39749556 - 39827633

78078

ENSAPLT00000018189

39749556 - 39870985

121430