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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39826454_39827233_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39826454 - 39827233
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACAG
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTTCTTTATA
Flanking Amino Acid:
QPKNFFQNNKVQLMVTDSEL
Intron Amino Acid Position:
2232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
57.1
41.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.2
0.7
0.8
76.3
32.5
Minor 5ss
37.5
-1.4
3
47.5
47.9
Minor BPS
59.5
0.29
1.6
67.07
39.5

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032013
39749556 - 39827633
78078
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430