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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39827339_39827435_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39827339 - 39827435

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTACTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAACAAT

U12 Branch Point Sequence:

TATTTTTCTACT

Flanking Amino Acid:

KCKSHKKEYQVGVTINNSSF

Intron Amino Acid Position:

2267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.5

26.8

Major BPS

57.4

0.18

1.3

65.4

Major PPT

82.5

0.73

0.8

76.9

30.6

Minor 5ss

28.3

-2.5

3.1

31.2

36.7

Minor BPS

54.6

0.22

1.8

76.67

40.2

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430

ENSAPLT00000032013

39749556 - 39827633

78078