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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39827583_39830363_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39827583 - 39830363
Intron Length:
2781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
EKWIPIVLQQCIPFWPENDA
Intron Amino Acid Position:
2316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430