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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39835933_39839863_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39835933 - 39839863

Intron Length:

3931

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTCAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

ACTTGCTAAATC

Flanking Amino Acid:

KQEVSYIGITSSDVVWETKP

Intron Amino Acid Position:

2525

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.13

0.6

93.1

14.6

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

76.3

0.59

78.1

34.2

Minor 5ss

41.9

-0.9

2.9

57.8

46.8

Minor BPS

50.9

0.01

2.1

63.94

42.4

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430