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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39842962_39843514_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39842962 - 39843514

Intron Length:

553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GATTTTTGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ACTTTTTTGATT

Flanking Amino Acid:

TAGHSQISHIKYFKVLIQEM

Intron Amino Acid Position:

2676

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

93.7

19.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

73.9

0.54

69.8

41.2

Minor 5ss

43.4

-0.7

2.9

60.8

37.6

Minor BPS

66.5

0.6

1.1

75.74

35.5

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430