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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39843613_39846399_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

39843613 - 39846399

Intron Length:

2787

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ATG|GCCAACAGG

5'SS Class:

weak_major

3'SS Sequence:

CATTCACAGCTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

GTTTTTTCAAAA

Flanking Amino Acid:

EFFTQTDVPNELFKKDVESL

Intron Amino Acid Position:

2709

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.5

0.2

1.2

51.4

44.7

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

55.5

0.12

48.6

39.5

Minor 5ss

23.4

-3.1

3.6

28.3

38.1

Minor BPS

57.6

0.23

1.6

69.3

36.7

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005236

39749556 - 39870985

121430