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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39850195_39850545_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39850195 - 39850545

Intron Length:

351

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGGAGA

5'SS Class:

major

3'SS Sequence:

TTTCTTTTGGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTGTTTTCATT

Flanking Amino Acid:

ITRGGKGLVSGFVSGITGIV

Intron Amino Acid Position:

2940

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

42.9

Major BPS

100

1.24

0.5

100

Major PPT

81.5

0.71

0.9

80.8

31.2

Minor 5ss

34.5

-1.8

3.3

49.5

46.5

Minor BPS

56.6

0.29

1.8

78.3

39.3

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430