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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39850592_39850852_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39850592 - 39850852

Intron Length:

261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TTAATCCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TTTTCTAAAAAT

Flanking Amino Acid:

ITGIVTKPIRGAQKEGAAGF

Intron Amino Acid Position:

2955

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.5

1.12

0.6

90.6

20.3

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

77.1

0.61

0.8

74.6

35.9

Minor 5ss

36.3

-1.6

3.3

47.2

Minor BPS

55.2

0.24

82.07

39.2

Associated Gene:

Gene:

VPS13A

Ensembl Gene ID:

ENSAPLG00000005010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018189

39749556 - 39870985

121430

ENSAPLT00000005236

39749556 - 39870985

121430