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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39850977_39852674_F

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39850977 - 39852674
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATAGCTTAATT
Flanking Amino Acid:
MASSTFQGIKKVADSSEDVV
Intron Amino Acid Position:
2996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.2
0.79
0.8
83.9
31.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
66.3
0.59
1.8
82
39.5

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018189
39749556 - 39870985
121430
ENSAPLT00000005236
39749556 - 39870985
121430