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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39865346_39865971_F

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39865346 - 39865971
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATTTTTAAATT
Flanking Amino Acid:
NNTDLLMVTKSGVLFVTKGT
Intron Amino Acid Position:
3063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.8
0.72
0.8
76.8
37.4
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
58.6
0.35
1.6
72.9
38.6

Associated Gene:

Gene:
VPS13A
Ensembl Gene ID:
ENSAPLG00000005010
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005236
39749556 - 39870985
121430
ENSAPLT00000018189
39749556 - 39870985
121430