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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39880728_39882427_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39880728 - 39882427
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GTAACTTCAAAT
Flanking Amino Acid:
DQVLAECDNENRMEESKALF
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
86.6
0.82
0.7
80.9
31.3
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
51.4
0.12
1.7
68.52
41.6

Associated Gene:

Gene:
GNA14
Ensembl Gene ID:
ENSAPLG00000004760
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047483
39879381 - 39953584
74204
ENSAPLT00000004916
39879381 - 39953584
74204