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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39883250_39884997_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39883250 - 39884997
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGTTAAT
5'SS Class:
major
3'SS Sequence:
TGTGCCAACTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
ATGCCCTCATTT
Flanking Amino Acid:
LHYLMTIRLNQDILRVRVPT
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
72.8
38
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
63.5
0.3
1
59.7
40.7
Minor 5ss
38.5
-1.3
3.2
55
42.7
Minor BPS
49.7
0.06
1.8
68.27
42.7

Associated Gene:

Gene:
GNA14
Ensembl Gene ID:
ENSAPLG00000004760
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047483
39879381 - 39953584
74204