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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40004272_40053663_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40004272 - 40053663
Intron Length:
49392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
KIPYKYEHNKAHAQLVREVD
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
76.4
0.59
0.9
78.7
33.5
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
GNAQ
Ensembl Gene ID:
ENSAPLG00000005161
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007043
39972077 - 40097462
125386
ENSAPLT00000005350
39972077 - 40097462
125386