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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40053843_40083741_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
40053843 - 40083741
Intron Length:
29899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCTCCACA
5'SS Class:
weak_major
3'SS Sequence:
CTTGCAGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATATCCTTATTT
Flanking Amino Acid:
RHMGLVLVGVGESGKSTFIK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.4
55.1
43.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
60.3
0.23
1.1
53.1
40.7
Minor 5ss
46.7
-0.3
2.3
59.3
44.8
Minor BPS
71.2
0.74
1.5
83.42
37.6

Associated Gene:

Gene:
GNAQ
Ensembl Gene ID:
ENSAPLG00000005161
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007043
39972077 - 40097462
125386