About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40159793_40160943_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40159793 - 40160943
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCACTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCCCCACTA
Flanking Amino Acid:
DYKGLGISVLEMSHRTADFT
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
65
0.34
1
64.3
29.9
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
49.8
-0
2.1
72.38
39.9

Associated Gene:

Gene:
PSAT1
Ensembl Gene ID:
ENSAPLG00000005388
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005603
40159747 - 40172164
12418