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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40161014_40162130_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40161014 - 40162130
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTCTTGCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AATAAAATAAAT
Flanking Amino Acid:
NTAENLLRELLNIPENYKVI
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
78.7
0.65
0.9
73.7
36
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
42.7
-0.4
2
62.01
40.2

Associated Gene:

Gene:
PSAT1
Ensembl Gene ID:
ENSAPLG00000005388
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005603
40159747 - 40172164
12418