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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40162337_40163948_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40162337 - 40163948
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
IVHPKLSTYTNIPDPSTWNL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
70.4
0.46
0.9
70
36.5
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
PSAT1
Ensembl Gene ID:
ENSAPLG00000005388
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005603
40159747 - 40172164
12418