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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40356527_40358384_F

Intron Information:

Intron Rank:
132317
Intron Class:
major
Intron Phase:
Intron Coordinates:
40356527 - 40358384
Intron Length:
1858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
GTTTATTCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.3
37
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.1
0.65
0.8
73.4
36.9
Minor 5ss
43.8
-0.7
2.9
59.9
39.9
Minor BPS
49.5
0.04
2.3
81.72
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021089
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025264
40356406 - 40360550
4145