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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4042812_4043592_R

Intron Information:

Intron Rank:
133445
Intron Class:
major
Intron Phase:
Intron Coordinates:
4042812 - 4043592
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATAT
5'SS Class:
major
3'SS Sequence:
CCTTTCCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
GTAGGAGTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
33
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
78.9
0.65
0.7
73.8
24.5
Minor 5ss
33.7
-1.9
3.1
39
46.2
Minor BPS
39.9
-0.7
2.5
52.93
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019060
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027651
4041812 - 4046374
4563