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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4063305_4065908_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4063305 - 4065908
Intron Length:
2604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTTTGCTATTT
Flanking Amino Acid:
FFDSFDNDGKKNNPGVIVVG
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
70.9
41.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
36
-1.6
2.6
41.8
44.7
Minor BPS
43.8
-0.3
2.4
68.65
42.7

Associated Gene:

Gene:
LMAN1
Ensembl Gene ID:
ENSAPLG00000010808
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011287
4062627 - 4078314
15688