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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4065971_4066696_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4065971 - 4066696
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TCTTCTTGCATA
Flanking Amino Acid:
NNGNLLYDHQNDGSTQALAS
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
75.1
0.56
0.8
71.9
32.7
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
52
0.06
1.9
67.43
39.9

Associated Gene:

Gene:
LMAN1
Ensembl Gene ID:
ENSAPLG00000010808
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011287
4062627 - 4078314
15688