About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4068428_4068808_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4068428 - 4068808
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TTGTTTAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTTTGTTTAATC
Flanking Amino Acid:
GISAATGGLADDHDVLSFLT
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
78.3
0.64
1
71.1
43.3
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
65.8
0.47
1.7
74.58
36.6

Associated Gene:

Gene:
LMAN1
Ensembl Gene ID:
ENSAPLG00000010808
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011287
4062627 - 4078314
15688