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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40701970_40702349_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40701970 - 40702349
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCGCCGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTCT
U12 Branch Point Sequence:
CTCTCTTTCTCT
Flanking Amino Acid:
SKMYPQTRHPAPHQPAQPFK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
33.2
-1
4.2
59.6
46.8
Major PPT
68.7
0.42
0.9
60.7
35.2
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
42.2
-0.5
3.6
70.73
46.8

Associated Gene:

Gene:
TLE4
Ensembl Gene ID:
ENSAPLG00000004314
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004459
40701925 - 40797144
95220