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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40703600_40705053_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40703600 - 40705053
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TCTTCTCTCATA
Flanking Amino Acid:
KTEMQRHYVMYYEMSYGLNI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.6
41.3
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
80.6
0.69
0.7
76.3
25.9
Minor 5ss
38.9
-1.3
2.9
45.6
43.8
Minor BPS
49.7
-0
2
67.2
40.2

Associated Gene:

Gene:
TLE4
Ensembl Gene ID:
ENSAPLG00000004314
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004459
40701925 - 40797144
95220