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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40705099_40733228_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40705099 - 40733228
Intron Length:
28130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATTTATATAATT
Flanking Amino Acid:
YGLNIEMHKQAEIVKRLNAI
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.2
0.75
0.9
77.6
35.6
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
59.5
0.38
1.7
80.35
35.2

Associated Gene:

Gene:
TLE4
Ensembl Gene ID:
ENSAPLG00000004314
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004459
40701925 - 40797144
95220