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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4070665_4075807_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4070665 - 4075807
Intron Length:
5143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
CGTCTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTGTATTGAATG
Flanking Amino Acid:
EEVIRQVNEMRNSMADTLRL
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
72.1
0.5
0.9
69.5
36.8
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
53.3
-0
1.7
60.94
41.4

Associated Gene:

Gene:
LMAN1
Ensembl Gene ID:
ENSAPLG00000010808
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011287
4062627 - 4078314
15688