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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40742050_40784292_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40742050 - 40784292
Intron Length:
42243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TTTCTAACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTTCTAACT
Flanking Amino Acid:
TMAELNAIIGSSSVSPSASF
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.1
0.7
0.8
75.3
33.3
Minor 5ss
40.1
-1.1
3.2
49.2
47.1
Minor BPS
67
0.61
1.6
83.74
37.5

Associated Gene:

Gene:
TLE4
Ensembl Gene ID:
ENSAPLG00000004314
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004459
40701925 - 40797144
95220