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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_40787672_40787872_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40787672 - 40787872
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GGGAAACCTATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTAATATACCT
Flanking Amino Acid:
AAAAYGRSPVVGFDPHHHMR
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
50.8
0.02
1
40.3
39.3
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
47.7
-0
2
74.66
41.8

Associated Gene:

Gene:
TLE4
Ensembl Gene ID:
ENSAPLG00000004314
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004459
40701925 - 40797144
95220