About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4084738_4087804_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4084738 - 4087804
Intron Length:
3067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTCTGATTT
Flanking Amino Acid:
EEYQKQVVEEKMERDAAFAQ
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.9
73.4
41
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
57.7
0.32
1.7
75.98
41.3

Associated Gene:

Gene:
CPLX4
Ensembl Gene ID:
ENSAPLG00000010654
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011089
4084571 - 4102168
17598