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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4087893_4101509_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4087893 - 4101509
Intron Length:
13617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTGCTTTTATT
Flanking Amino Acid:
HLREKYRLPKSELDENQIQM
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.4
0.64
1
78
40.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
53.9
0.2
1.7
69.21
42.4

Associated Gene:

Gene:
CPLX4
Ensembl Gene ID:
ENSAPLG00000010654
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011089
4084571 - 4102168
17598